Writing
Notes, how-tos and small things I figured out along the way — mostly so future me doesn’t have to figure them out again.
🛑 How to stop Ollama auto-launching on Mac — even when it’s NOT in Login Items
If Ollama keeps opening at login but doesn’t appear in System Preferences → Users & Groups → Login Items, here’s what’s really going on
🐒 Monkey Patching with Context Managers — Python Clean Hack
Sometimes you need to override the behavior of a library function temporarily—maybe to fix a bug, tweak behavior, or experiment—without editing its source code.
ADFRsuite on MacOS
Installing and using ADFRsuite on MacOS
Boosting reproducibility, compatibility and scalability with Snakemake
A simple example of how to use Snakemake to parallelize a typical workflow
CHARMM to GMX
Getting TOP and GRO from CHARMM files using ParmED